| | IND Queens Boulevard Line |
| | |
| | Long Island City – Court Square |
| | IRT Flushing Line |
| | 21st Street |
| | IRT Flushing Line |
| | Greenpoint Avenue |
| | Nassau Avenue |
| | BMT Canarsie Line |
| | Metropolitan Avenue |
| | Broadway |
| | BMT Jamaica Line |
| | Flushing Avenue |
| | Myrtle–Willoughby Avenues |
| | Bedford–Nostrand Avenues |
| | Classon Avenue |
| | Clinton–Washington Avenues |
| | Fulton Street |
| | IND Fulton Street Line |
| | BMT Brighton Line |
| | BMT Fourth Avenue Line |
| | IRT Eastern Parkway Line |
| | Hoyt–Schermerhorn Streets |
| | Ab hier Culver Line |
| | Bergen Street |
| | Carroll Street |
| | |
| | Smith–Ninth Streets |
| | Fourth Avenue BMT Fourth Avenue Line |
| | |
| | Seventh Avenue |
| | Express Tracks |
| | 15th Street |
| | Fort Hamilton Parkway |
| | Express Tracks |
| Church Avenue | |
| | |
| | |
| | |
| | Ninth Avenue |
| | Fort Hamilton Parkway (demolished) |
| | 13th Avenue) |
| | Former BMT Culver Line connection |
| | Ditmas Avenue Former Culver Shuttle terminal |
| | 18th Avenue |
| | Avenue I |
| | Bay Parkway |
| | Avenue N |
| | Avenue P |
| | Kings Highway |
| | Avenue U |
| | Avenue X |
| | Coney Island Yard |
| | Neptune Avenue |
| | Former BMT Brighton Line connection |
| | West Eighth Street – New York Aquarium |
| | BMT West End and Sea Beach Lines |
| | Coney Island – Stillwell Avenue |